SMTL ID : 6rue.1

Wolinella succinogenes L-asparaginase mutant V23Q,K24T with L-Asp

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

4 x ASP: ASPARTIC ACID(Non-covalent)

ASP.1: 10 residues within 4Å: Chain A: G.47, S.48, Q.49, G.80, T.81, D.82, A.106, M.107 Chain C: N.237, E.272 10 PLIP interactions: 1 interactions with chain C, 7 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: C:E.272, A:S.48, A:Q.49, A:T.81, A:D.82, A:D.82, D.1, D.1 Water bridges: A:K.154 Salt bridges: A:K.154 ASP.2: 12 residues within 4Å: Chain B: G.11, T.12, G.43, S.44, Q.45, G.76, T.77, D.78, A.102, M.103 Chain D: N.239, E.274 13 PLIP interactions: 10 interactions with chain B, 2 Ligand-Ligand interactions, 1 interactions with chain D Hydrogen bonds: B:T.12, B:T.12, B:S.44, B:Q.45, B:T.77, B:D.78, D.2, D.2, D:E.274 Water bridges: B:I.13, B:K.150, B:K.150 Salt bridges: B:K.150 ASP.3: 12 residues within 4Å: Chain A: N.240, E.275 Chain C: G.11, T.12, G.44, S.45, Q.46, G.77, T.78, D.79, A.103, M.104 14 PLIP interactions: 11 interactions with chain C, 1 interactions with chain A, 2 Ligand-Ligand interactions Hydrophobic interactions: C:T.12 Hydrogen bonds: C:T.12, C:S.45, C:Q.46, C:T.78, C:D.79, A:E.275, D.3, D.3 Water bridges: C:T.12, C:I.13, C:K.151, C:K.151 Salt bridges: C:K.151 ASP.4: 12 residues within 4Å: Chain B: N.236, E.271 Chain D: G.11, T.12, G.46, S.47, Q.48, G.79, T.80, D.81, A.105, M.106 14 PLIP interactions: 13 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:T.12, D:T.12, D:S.47, D:Q.48, D:T.80, D:D.81, D:D.81, B:E.271 Water bridges: D:T.12, D:I.13, D:K.153, D:K.153, D:K.153 Salt bridges: D:K.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timofeev, V.I. et al., Features of the Three Dimensional Structure of the Mutant Form of Wolinella succinogenes L-Asparaginase in Complexes with L-Aspartic and L-Glutamic Acids. Russ.J.Bioorganic Chem. (2020)

Release Date

2020-07-15

Peptides

L-asparaginase: A
L-asparaginase: B
L-asparaginase: C
L-asparaginase: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-asparaginase

L-asparaginase

L-asparaginase

L-asparaginase