SMTL ID : 6ruf.1

Wolinella succinogenes L-asparaginase mutant V23Q,K24T with L-Glu

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.1: 9 residues within 4Å: Chain A: G.57, S.58, Q.59, G.90, T.91, D.92, A.116 Chain B: N.250, E.285 9 PLIP interactions: 1 interactions with chain B, 8 interactions with chain A, Hydrogen bonds: B:E.285, A:S.58, A:Q.59, A:T.91, A:D.92, A:D.92 Water bridges: A:A.116, A:K.164 Salt bridges: A:K.164 GLU.2: 9 residues within 4Å: Chain A: N.250, E.285 Chain B: G.57, S.58, Q.59, G.90, T.91, D.92, A.116 10 PLIP interactions: 6 interactions with chain B, 2 Ligand-Ligand interactions, 2 interactions with chain A Hydrogen bonds: B:S.58, B:T.91, B:D.92, E.2, E.2, A:N.250, A:E.285 Water bridges: B:A.116, B:K.164 Salt bridges: B:K.164 GLU.3: 9 residues within 4Å: Chain C: G.57, S.58, Q.59, G.90, T.91, D.92, A.116 Chain D: N.250, E.285 8 PLIP interactions: 2 Ligand-Ligand interactions, 5 interactions with chain C, 1 interactions with chain D Hydrogen bonds: E.3, E.3, C:S.58, C:T.91, C:D.92, D:E.285 Water bridges: C:K.164 Salt bridges: C:K.164 GLU.4: 9 residues within 4Å: Chain C: N.250, E.285 Chain D: G.57, S.58, Q.59, G.90, T.91, D.92, A.116 8 PLIP interactions: 7 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:S.58, D:Q.59, D:T.91, D:D.92, D:D.92, C:E.285 Water bridges: D:K.164 Salt bridges: D:K.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timofeev, V.I. et al., Features of the Three Dimensional Structure of the Mutant Form of Wolinella succinogenes L-Asparaginase in Complexes with L-Aspartic and L-Glutamic Acids. Russ.J.Bioorganic Chem. (2020)

Release Date

2020-07-15

Peptides

L-asparaginase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-asparaginase

Related Entries With Identical Sequence