SMTL ID : 6rv0.1

human Alanine:Glyoxylate Aminotransferase major allele (AGT-Ma); with PMP in the active site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PMP.1: 14 residues within 4Å: Chain A: S.81, G.82, H.83, W.108, G.156, S.158, D.183, V.185, A.186, Q.208, K.209 Chain B: Y.260, H.262, T.263 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:W.108, A:V.185, A:A.186 Hydrogen bonds: A:G.82, A:H.83, A:S.158, A:Q.208, A:K.209, A:K.209, B:T.263, B:T.263 Salt bridges: A:H.83 pi-Stacking: A:W.108, A:W.108 PMP.2: 14 residues within 4Å: Chain A: Y.260, H.262, T.263 Chain B: S.81, G.82, H.83, W.108, G.156, S.158, D.183, V.185, A.186, Q.208, K.209 16 PLIP interactions: 12 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:W.108, B:V.185, B:A.186 Hydrogen bonds: B:G.82, B:H.83, B:S.158, B:Q.208, B:K.209, B:K.209, A:Y.260, A:T.263, A:T.263, A:T.263 Salt bridges: B:H.83 pi-Stacking: B:W.108, B:W.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dindo, M. et al., Cycloserine enantiomers are reversible inhibitors of human alanine:glyoxylate aminotransferase: implications for Primary Hyperoxaluria type 1. Biochem.J. (2019)

Release Date

2020-04-08

Peptides

Serine--pyruvate aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Serine--pyruvate aminotransferase

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