SMTL ID : 6rv5.1

X-ray structure of the levansucrase from Erwinia tasmaniensis in complex with levanbiose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x FRU- FRU: beta-D-fructofuranose-(2-6)-beta-D-fructofuranose(Non-covalent)

FRU-FRU.1: 7 residues within 4Å: Chain A: A.31, V.34, I.86, W.368, F.373, R.374, I.375 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.373, A:R.374, A:I.375 Water bridges: A:I.375

11 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: K.108, F.398, D.399, Y.402 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.108, A:D.399 GOL.3: 5 residues within 4Å: Chain A: W.42, D.43, L.66, H.94, W.128 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.94, A:W.128 Water bridges: A:D.43, A:D.43, A:D.200 GOL.4: 6 residues within 4Å: Chain A: L.134, L.135, N.136, D.137, K.407, I.409 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.134, A:K.407 Water bridges: A:F.50, A:K.407 GOL.5: 6 residues within 4Å: Chain A: N.193, Y.195, R.224, Y.249, Q.250, D.281 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.193, A:N.193, A:R.224, A:Q.250 GOL.6: 6 residues within 4Å: Chain A: K.303, F.306, A.307, D.308, L.310, T.311 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.308, A:L.310, A:T.311, A:T.311 Water bridges: A:N.309 GOL.7: 5 residues within 4Å: Chain A: C.61, R.105, T.106, P.404, A.405 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.405 Water bridges: A:T.106, A:Y.402 GOL.8: 6 residues within 4Å: Chain A: K.108, D.109, W.110, E.379, Y.400, G.401 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.109, A:W.110, A:Y.400 Water bridges: A:D.109, A:W.110 GOL.9: 8 residues within 4Å: Chain A: W.128, V.148, A.152, W.196, N.197, F.198, R.199 Ligands: GOL.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.196, A:F.198, A:R.199, A:R.199 GOL.10: 7 residues within 4Å: Chain A: H.94, G.95, R.126, W.128, V.148, T.149 Ligands: GOL.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.126, A:T.149, A:T.149 GOL.11: 6 residues within 4Å: Chain A: N.208, F.290, Q.291, G.293, K.294, Y.295 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.208, A:Q.291, A:G.293, A:K.294 GOL.12: 8 residues within 4Å: Chain A: V.39, T.67, A.68, D.69, R.96, R.98, C.100, R.115 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.68, A:R.96

2 x ZN: ZINC ION(Non-covalent)

ZN.13: 3 residues within 4Å: Chain A: D.49, D.51, D.53 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.49, A:D.49, A:D.51, A:D.53, H2O.11 ZN.14: 2 residues within 4Å: Chain A: D.137, E.138 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.137, A:E.138, A:E.138, H2O.11, H2O.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Polsinelli, I. et al., The Structure of Sucrose-Soaked Levansucrase Crystals fromErwinia tasmaniensisreveals a Binding Pocket for Levanbiose. Int J Mol Sci (2019)

Release Date

2020-04-01

Peptides

Levansucrase (Beta-D-fructofuranosyl transferase): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Levansucrase (Beta-D-fructofuranosyl transferase)

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