- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-1-mer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CLR: CHOLESTEROL(Non-covalent)(Covalent)
- 7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 3 residues within 4Å:- Chain A: A.306, K.311, N.312
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.312
NAG.4: 2 residues within 4Å:- Chain A: N.349, T.351
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.351
NAG.5: 1 residues within 4Å:- Chain A: N.414
No protein-ligand interaction detected (PLIP)NAG.6: 3 residues within 4Å:- Chain A: N.871, N.872, N.875
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.872, A:N.875
NAG.7: 3 residues within 4Å:- Chain A: R.138, N.141, Q.145
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:R.138
- Hydrogen bonds: A:Q.145
NAG.10: 2 residues within 4Å:- Chain B: A.412, N.414
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:A.412
NAG.11: 2 residues within 4Å:- Chain B: N.1000, L.1004
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.1000
- 1 x PLM: PALMITIC ACID(Covalent)
PLM.12: 15 residues within 4Å:- Chain A: L.128, W.129, L.427, L.431, F.434, N.496, A.498, A.569, L.570, L.777, I.780, F.1017, V.1081
- Chain C: C.1, G.2
14 PLIP interactions:13 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:L.128, A:W.129, A:L.427, A:L.431, A:F.434, A:A.498, A:A.569, A:L.570, A:L.777, A:L.777, A:I.780, A:F.1017, A:V.1081
- Hydrogen bonds: C:G.2
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
CA.15: 4 residues within 4Å:- Chain C: E.67, E.103, D.106, D.108
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:E.67, C:E.103, C:E.103, C:D.106, C:D.108
CA.16: 5 residues within 4Å:- Chain C: E.66, E.67, D.72, T.102, E.103
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:E.66, C:E.67, C:D.72, C:T.102, C:E.103
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Rudolf, A.F. et al., The morphogen Sonic hedgehog inhibits its receptor Patched by a pincer grasp mechanism. Nat.Chem.Biol. (2019)
- Release Date
- 2019-10-02
- Peptides
- Protein patched homolog 1: AB
Sonic hedgehog protein: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-1-mer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CLR: CHOLESTEROL(Non-covalent)(Covalent)
- 7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x PLM: PALMITIC ACID(Covalent)
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Rudolf, A.F. et al., The morphogen Sonic hedgehog inhibits its receptor Patched by a pincer grasp mechanism. Nat.Chem.Biol. (2019)
- Release Date
- 2019-10-02
- Peptides
- Protein patched homolog 1: AB
Sonic hedgehog protein: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.