SMTL ID : 6rvz.1

Crystal structure of ANGEL2, a 2',3'-cyclic phosphatase, in complex with adenosine-2',3'-vanadate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x KL2: adenosine-2',3'-vanadate(Non-covalent)

KL2.1: 19 residues within 4Å: Chain A: N.58, L.64, N.68, H.70, L.71, E.105, R.131, N.170, H.195, Y.198, D.236, N.238, T.354, H.356, V.363, D.417, H.418 Ligands: MG.2, K.5 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:N.58, A:R.131, A:R.131, A:H.195, A:Y.198, A:N.238, A:N.238, A:H.418 Water bridges: A:K.135, A:Y.198, A:T.354, A:H.356, A:H.356, A:H.356, A:H.356, A:D.417, A:D.417 pi-Stacking: A:Y.198, A:Y.198

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: N.58, L.60, E.105, H.418 Ligands: KL2.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.105, H2O.1, H2O.3, H2O.5

1 x ADN: ADENOSINE(Non-covalent)

ADN.3: 5 residues within 4Å: Chain A: H.74, S.357, W.404, N.407 Ligands: K.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.357 pi-Stacking: A:W.404, A:W.404

3 x K: POTASSIUM ION(Non-covalent)

K.4: 5 residues within 4Å: Chain A: R.201, I.261, G.273, Q.274, R.275 No protein-ligand interaction detected (PLIP) K.5: 4 residues within 4Å: Chain A: L.64, R.131, K.135 Ligands: KL2.1 No protein-ligand interaction detected (PLIP) K.6: 4 residues within 4Å: Chain A: W.404, T.405, N.407 Ligands: ADN.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:W.404, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinto, P.H. et al., ANGEL2 is a member of the CCR4 family of deadenylases with 2',3'-cyclic phosphatase activity. Science (2020)

Release Date

2020-05-20

Peptides

Protein angel homolog 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein angel homolog 2

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