SMTL ID : 6rw2.1

Bicycle Toxin Conjugate bound to EphA2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: K.108, E.109, T.110 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.108, A:E.109, A:T.110, A:T.110

1 x 29N: 1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one(Covalent)

29N.2: 10 residues within 4Å: Chain A: M.47, M.58 Chain B: R.2, C.4, P.5, L.6, V.7, C.11, W.16, C.18 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.7 Hydrogen bonds: B:V.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mudd, G.E. et al., Identification and Optimization of EphA2-Selective Bicycles for the Delivery of Cytotoxic Payloads. J.Med.Chem. (2020)

Release Date

2020-04-08

Peptides

Ephrin type-A receptor 2: A
ALA-ARG-ASP-CYS-PRO-LEU-VAL-ASN-PRO-LEU-CYS-LEU-HIS-PRO-GLY-TRP-THR-CYS: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ephrin type-A receptor 2

ALA-ARG-ASP-CYS-PRO-LEU-VAL-ASN-PRO-LEU-CYS-LEU-HIS-PRO-GLY-TRP-THR-CYS