SMTL ID : 6rwq.1

Engineered beta-lactoglobulin: variant F105L in complex with myristic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 9 residues within 4Å: Chain A: L.39, I.56, L.58, K.69, I.71, L.105, M.107, A.118, Q.120 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.39, A:I.56, A:L.58, A:I.71, A:L.105, A:A.118, A:Q.120 MYR.3: 9 residues within 4Å: Chain B: L.39, I.56, L.58, K.69, I.71, L.105, M.107, A.118, Q.120 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.39, B:I.56, B:L.58, B:I.71, B:L.105, B:A.118, B:Q.120

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: T.76, K.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.77 Water bridges: A:K.75 EDO.4: 2 residues within 4Å: Chain B: T.76, K.77 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.77 Water bridges: B:K.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonarek, P. et al., Structure-based design approach to rational site-directed mutagenesis of beta-lactoglobulin. J.Struct.Biol. (2020)

Release Date

2019-06-19

Peptides

Beta-lactoglobulin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Beta-lactoglobulin

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