SMTL ID : 6rxq.2 (3 other biounits)

Crystal structure of CobB Ac2 (A76G,I131C,V162A) in complex with H4K16Cr-2'OH-ADPr peptide intermediate after soaking

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x KMQ: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{S})-4-[(~{E})-but-2-enoxy]-3,5-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate(Covalent)

KMQ.1: 23 residues within 4Å: Chain A: G.23, A.24, G.25, A.28, E.29, F.35, W.42, Y.67, Q.104, H.122, V.162, V.163, F.165, G.189, T.190, S.191, V.194, N.215, L.216, E.217, P.232, A.233 Chain B: K.5 24 PLIP interactions: 22 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:W.42, A:V.162 Hydrogen bonds: A:A.24, A:E.29, A:E.29, A:F.35, A:Q.104, A:H.122, A:T.190, A:T.190, A:S.191, A:S.191, A:N.215, A:L.216, A:E.217, A:E.217, A:A.233 Water bridges: A:A.28, A:A.28, A:V.163, A:G.192, A:G.192, B:K.5 Salt bridges: B:K.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spinck, M. et al., Evolved, Selective Erasers of Distinct Lysine Acylations. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2020-04-15

Peptides

NAD-dependent protein deacylase: A
Histone H4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
F

NAD-dependent protein deacylase

Histone H4

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