SMTL ID : 6ryn.1

Structure of conglutinin carbohydrate recognition domain with GlcNAc-alpha-1-phosphate bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: E.92, N.94, E.102, N.114, D.115 Ligands: GN1.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.92, A:E.102, A:D.115, A:D.115 CA.2: 4 residues within 4Å: Chain A: D.68, E.72, E.102, N.103 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.68, A:E.72, A:E.72, A:E.102, H2O.2

1 x GN1: 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose(Non-covalent)

GN1.3: 10 residues within 4Å: Chain A: E.92, N.94, E.102, E.106, N.114, D.115, V.116, P.117, K.120 Ligands: CA.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.102, A:E.102, A:N.114 Water bridges: A:E.92, A:K.120, A:K.120, A:K.120, A:K.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Paterson, J.M. et al., Atomic-resolution crystal structures of the immune protein conglutinin from cow reveal specific interactions of its binding site withN-acetylglucosamine. J.Biol.Chem. (2019)

Release Date

2019-10-09

Peptides

Conglutinin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Conglutinin

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