SMTL ID : 6s07.1

Structure of formylglycine-generating enzyme at 1.04 A in complex with copper and substrate reveals an acidic pocket for binding and acti-vation of molecular oxygen.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.04 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CU1: COPPER (I) ION(Non-covalent)

CU1.1: 5 residues within 4Å: Chain A: W.229, C.270, C.275, R.277 Chain B: C.7 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.7, A:C.270, A:C.275

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 7 residues within 4Å: Chain A: N.223, V.224, G.226, V.228, E.230, G.265, G.266 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:V.224, A:G.226, A:V.228 CA.3: 8 residues within 4Å: Chain A: N.189, I.190, W.191, Q.192, D.203, Y.205, T.206, F.268 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:I.190, A:D.203, A:Y.205, H2O.2, H2O.2

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: R.131, P.132, N.133, H.134, P.210 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miarzlou, D.A. et al., Structure of formylglycine-generating enzyme in complex with copper and a substrate reveals an acidic pocket for binding and activation of molecular oxygen. Chem Sci (2019)

Release Date

2019-06-26

Peptides

Formylglycine-generating enzyme: A
Abz-ALA-THR-THR-PRO-LEU-CYS-GLY-PRO-SER-ARG-ALA-SER-ILE-LEU-SER-GLY-ARG: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Formylglycine-generating enzyme

Abz-ALA-THR-THR-PRO-LEU-CYS-GLY-PRO-SER-ARG-ALA-SER-ILE-LEU-SER-GLY-ARG

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