SMTL ID : 6s20.1

Metabolism of multiple glycosaminoglycans by bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus (BT33336S-sulf)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x NG6: 2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose(Non-covalent)

NG6.1: 21 residues within 4Å: Chain A: D.45, D.46, T.84, S.85, I.106, K.138, H.140, T.173, D.175, R.176, Q.223, H.225, I.236, H.282, V.283, N.335, D.341, K.364, Y.365, W.466 Ligands: CA.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Q.223, A:W.466 Hydrogen bonds: A:S.85, A:S.85, A:D.175, A:R.176, A:R.176, A:N.335, A:D.341 Water bridges: A:D.341, A:Y.365 Salt bridges: A:K.138, A:H.140, A:R.176, A:H.282, A:K.364

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 4 residues within 4Å: Chain A: Y.454, P.457, V.500, S.504 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.457 Hydrogen bonds: A:Y.454, A:S.504

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.45, D.46, S.85, D.334, N.335 Ligands: NG6.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.45, A:D.46, A:D.334, A:D.334

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ndeh, D. et al., Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus. Nat Commun (2020)

Release Date

2020-02-05

Peptides

N-acetylgalactosamine-6-O-sulfatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

N-acetylgalactosamine-6-O-sulfatase