SMTL ID : 6s21.1 (2 other biounits)

Metabolism of multiple glycosaminoglycans by bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus (BT33494S-sulf)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x BDP- ASG- GCD: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose-(1-4)-beta-D-glucopyranuronic acid

BDP-ASG-GCD.1: 20 residues within 4Å: Chain A: D.38, Q.39, L.88, S.89, N.110, R.115, K.143, H.145, W.168, T.188, D.190, H.246, S.247, P.248, H.325, D.336, P.337, K.338, N.339 Ligands: CA.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.337 Hydrogen bonds: A:Q.39, A:S.89, A:S.89, A:N.110, A:N.110, A:T.188, A:K.338, A:D.190, A:D.190, A:S.247, A:N.110, A:D.336, A:K.338, A:K.338, A:N.339 Water bridges: A:D.190, A:D.190 Salt bridges: A:K.143, A:H.145, A:H.246, A:K.338, A:R.115

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.38, S.89, D.324, H.325 Ligands: BDP-ASG-GCD.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.38, A:D.38, A:D.324, A:H.325

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ndeh, D. et al., Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus. Nat Commun (2020)

Release Date

2020-02-05

Peptides

Endo-4-O-sulfatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-4-O-sulfatase

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