SMTL ID : 6s2l.1

FMDV 3D polymerase crystallized in presence of (F)uridylylated VPg peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: H.322, Y.323, E.324 No protein-ligand interaction detected (PLIP) GOL.2: 9 residues within 4Å: Chain A: Y.81, R.84, P.209, Q.210, N.312, L.328, Y.331, T.332, M.333 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.312, A:L.328, A:T.332, A:T.332, A:M.333 GOL.3: 6 residues within 4Å: Chain A: M.111, E.112, T.115, R.128, I.189, R.193 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.112, A:R.128, A:R.128, A:R.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Castro, S. et al., (F)uridylylated Peptides Linked to VPg1 of Foot-and- Mouth Disease Virus (FMDV): Design, Synthesis and X-Ray Crystallography of the Complexes with FMDV RNA-Dependent RNA Polymerase. Molecules (2019)

Release Date

2019-07-03

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein