SMTL ID : 6s2z.1

Water-soluble Chlorophyll Protein (WSCP) from Brassica oleracea var. Botrytis with Chlorophyll-b

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x CHL: CHLOROPHYLL B(Non-covalent)

CHL.1: 25 residues within 4Å: Chain A: V.31, P.32, A.33, A.34, I.37, L.43, T.48, L.49, L.50, Q.53, L.56, S.84, I.86, W.87, P.88, V.89, W.151 Chain C: A.34, I.37, F.40 Chain D: L.50, Q.53, P.88 Ligands: CHL.3, CHL.4 22 PLIP interactions: 17 interactions with chain A, 3 interactions with chain D, 2 interactions with chain C, Hydrophobic interactions: A:V.31, A:V.31, A:P.32, A:A.34, A:I.37, A:L.43, A:L.43, A:L.56, A:W.87, A:V.89, A:W.151, A:W.151, A:W.151, D:L.50, D:L.50, D:P.88, C:A.34, C:F.40 Hydrogen bonds: A:T.48, A:L.49, A:V.89 Metal complexes: A:P.32 CHL.2: 25 residues within 4Å: Chain B: V.31, P.32, A.33, A.34, I.37, L.43, T.48, L.49, L.50, Q.53, L.56, S.84, I.86, W.87, P.88, V.89, W.151 Chain C: L.50, Q.53, P.88 Chain D: A.34, I.37, F.40 Ligands: CHL.3, CHL.4 22 PLIP interactions: 2 interactions with chain D, 17 interactions with chain B, 3 interactions with chain C, Hydrophobic interactions: D:A.34, D:F.40, B:V.31, B:V.31, B:P.32, B:A.34, B:I.37, B:L.43, B:L.43, B:L.56, B:W.87, B:V.89, B:W.151, B:W.151, B:W.151, C:L.50, C:L.50, C:P.88 Hydrogen bonds: B:T.48, B:L.49, B:V.89 Metal complexes: B:P.32 CHL.3: 25 residues within 4Å: Chain A: A.34, I.37, F.40 Chain B: L.50, Q.53, P.88 Chain C: V.31, P.32, A.33, A.34, I.37, L.43, T.48, L.49, L.50, Q.53, L.56, S.84, I.86, W.87, P.88, V.89, W.151 Ligands: CHL.1, CHL.2 22 PLIP interactions: 17 interactions with chain C, 3 interactions with chain B, 2 interactions with chain A, Hydrophobic interactions: C:V.31, C:V.31, C:P.32, C:A.34, C:I.37, C:L.43, C:L.43, C:L.56, C:W.87, C:V.89, C:W.151, C:W.151, C:W.151, B:L.50, B:L.50, B:P.88, A:A.34, A:F.40 Hydrogen bonds: C:T.48, C:L.49, C:V.89 Metal complexes: C:P.32 CHL.4: 25 residues within 4Å: Chain A: L.50, Q.53, P.88 Chain B: A.34, I.37, F.40 Chain D: V.31, P.32, A.33, A.34, I.37, L.43, T.48, L.49, L.50, Q.53, L.56, S.84, I.86, W.87, P.88, V.89, W.151 Ligands: CHL.1, CHL.2 22 PLIP interactions: 17 interactions with chain D, 3 interactions with chain A, 2 interactions with chain B, Hydrophobic interactions: D:V.31, D:V.31, D:P.32, D:A.34, D:I.37, D:L.43, D:L.43, D:L.56, D:W.87, D:V.89, D:W.151, D:W.151, D:W.151, A:L.50, A:L.50, A:P.88, B:A.34, B:F.40 Hydrogen bonds: D:T.48, D:L.49, D:V.89 Metal complexes: D:P.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agostini, A. et al., How water-mediated hydrogen bonds affect chlorophyll a/b selectivity in Water-Soluble Chlorophyll Protein. Sci Rep (2019)

Release Date

2019-12-18

Peptides

Water-Soluble Chlorophyll Protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Water-Soluble Chlorophyll Protein