SMTL ID : 6s35.1

LSD1/CoREST1 complex with macrocyclic peptide inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: G.118, S.119, G.120, V.121, S.122, L.140, E.141, A.142, R.143, G.147, G.148, R.149, V.150, L.162, G.163, A.164, M.165, V.166, T.421, A.422, V.423, T.457, L.458, P.459, V.470, W.584, W.589, S.593, Y.594, G.633, E.634, A.642, T.643, V.644, A.647 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:S.119, A:V.121, A:S.122, A:S.122, A:S.122, A:A.142, A:R.143, A:R.143, A:G.147, A:R.149, A:A.164, A:M.165, A:V.166, A:V.166, A:V.423, A:V.423, A:E.634, A:V.644 Salt bridges: A:R.149, A:R.149 pi-Stacking: A:Y.594

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J. et al., Macrocyclic Peptides Uncover a Novel Binding Mode for Reversible Inhibitors of LSD1. Acs Omega (2020)

Release Date

2020-02-26

Peptides

Lysine-specific histone demethylase 1A: A
REST corepressor 1: B
ALA-ARG-(D)LYS-MET-GLN-GLU-ALA-ARG-LYS-SER-THR: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Lysine-specific histone demethylase 1A

REST corepressor 1

ALA-ARG-(D)LYS-MET-GLN-GLU-ALA-ARG-LYS-SER-THR