- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.72 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x AG2: AGMATINE(Non-covalent)
AG2.2: 11 residues within 4Å:- Chain A: R.142, R.149, R.194, D.307, F.308, A.420, I.422, V.423, E.424, D.426, D.427
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:R.142
- Water bridges: A:R.149, A:R.149, A:D.307, A:D.307, A:D.307, A:F.308, A:D.426
- Salt bridges: A:D.307, A:D.427
AG2.5: 11 residues within 4Å:- Chain B: R.142, R.149, R.194, S.304, D.307, F.308, A.420, I.422, V.423, D.426, D.427
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:R.142
- Water bridges: B:R.149, B:S.304, B:D.307, B:D.307, B:D.307, B:D.307, B:F.308, B:A.420, B:A.420, B:I.422, B:E.424
- Salt bridges: B:D.307, B:D.427
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.3: 32 residues within 4Å:- Chain A: I.20, G.21, F.22, G.23, S.24, I.25, G.26, R.27, I.47, D.48, P.49, S.50, A.53, A.68, V.69, T.70, L.94, S.95, V.96, D.97, T.98, T.117, V.118, G.163, A.164, N.165, P.166, W.232, S.233, G.236, I.353, V.403
22 PLIP interactions:22 interactions with chain A- Hydrophobic interactions: A:I.25, A:W.232, A:V.403
- Hydrogen bonds: A:F.22, A:S.24, A:S.24, A:I.25, A:V.69, A:V.69, A:S.95, A:V.96, A:G.163, A:A.164, A:N.165, A:P.166, A:S.233, A:S.233
- Water bridges: A:G.23, A:G.26, A:V.118, A:Y.126, A:Y.126
NAD.6: 32 residues within 4Å:- Chain B: I.20, G.21, F.22, G.23, S.24, I.25, G.26, R.27, I.47, D.48, P.49, S.50, A.53, A.68, V.69, T.70, L.94, S.95, V.96, D.97, T.98, T.117, V.118, G.163, A.164, N.165, P.166, W.232, S.233, G.236, I.353, V.403
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:W.232, B:V.403
- Hydrogen bonds: B:S.24, B:S.24, B:I.25, B:V.69, B:V.69, B:S.95, B:V.96, B:T.117, B:G.163, B:A.164, B:N.165, B:P.166, B:S.233
- Water bridges: B:F.22, B:G.23, B:G.23, B:V.118, B:S.233, B:V.234, B:E.235
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Helfrich, F. et al., Structural and catalytic characterization of Blastochloris viridis and Pseudomonas aeruginosa homospermidine synthases supports the essential role of cation-pi interaction. Acta Crystallogr D Struct Biol (2021)
- Release Date
- 2020-07-08
- Peptides
- Homospermidine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.72 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x AG2: AGMATINE(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Helfrich, F. et al., Structural and catalytic characterization of Blastochloris viridis and Pseudomonas aeruginosa homospermidine synthases supports the essential role of cation-pi interaction. Acta Crystallogr D Struct Biol (2021)
- Release Date
- 2020-07-08
- Peptides
- Homospermidine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B