SMTL ID : 6s42.1

The double mutant(Ile44Leu+Gln102His) of haloalkane dehalogenase DbeA from Bradyrhizobium elkanii USDA94 with an eliminated halide-binding site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x HEZ: HEXANE-1,6-DIOL(Non-covalent)

HEZ.1: 9 residues within 4Å: Chain A: D.103, H.139, F.148, V.171, S.175, L.208, L.245, H.271 Ligands: IOD.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.148 Hydrogen bonds: A:S.175, A:S.175

8 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 6 residues within 4Å: Chain A: N.38, W.104, F.167, L.204, P.205 Ligands: HEZ.1 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: N.164, R.170 Ligand excluded by PLIP IOD.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: A.144 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain A: R.22 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: K.150 Ligand excluded by PLIP IOD.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain A: S.241, Q.265, G.267 Ligand excluded by PLIP

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 4 residues within 4Å: Chain A: H.31, G.93, A.95, S.96 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain A: E.279, A.280, R.283 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: P.131, R.133 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prudnikova, T. et al., Crystallization and Crystallographic Analysis of a Bradyrhizobium Elkanii USDA94 Haloalkane Dehalogenase Variant with an Eliminated Halide-Binding Site. Crystals (2019)

Release Date

2020-02-05

Peptides

Haloalkane dehalogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Haloalkane dehalogenase