SMTL ID : 6s4c.1

Crystal Structure of the vWFA2 subdomain of type VII collagen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: R.78 Ligands: EDT.2 No protein-ligand interaction detected (PLIP) MG.3: 6 residues within 4Å: Chain A: H.19, T.21, D.23, S.89, G.90, E.126 No protein-ligand interaction detected (PLIP)

1 x EDT: {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID(Non-covalent)

EDT.2: 5 residues within 4Å: Chain A: D.72, G.74, I.75, R.78 Ligands: MG.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.74 Water bridges: A:R.78, A:R.78 Salt bridges: A:D.72, A:R.78

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 2 residues within 4Å: Chain A: R.78, R.81 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.78 Salt bridges: A:R.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gebauer, J.M. et al., Structural and biophysical characterization of the type VII collagen vWFA2 subdomain leads to identification of two binding sites. Febs Open Bio (2020)

Release Date

2020-02-19

Peptides

Collagen alpha-1(VII) chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Collagen alpha-1(VII) chain