SMTL ID : 6s59.1

Structure of ovine transhydrogenase in the apo state

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

8 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.1: 11 residues within 4Å: Chain A: F.505, G.509, Y.513, W.517, W.844, S.867, A.870, I.871, Y.874 Ligands: PC1.2, PC1.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.505, A:W.844, A:A.870, A:I.871 Hydrogen bonds: A:Y.513 pi-Cation interactions: A:W.517, A:W.517 PC1.2: 12 residues within 4Å: Chain A: Y.479, L.489, F.505, G.506, I.510, Y.513 Chain B: G.518, L.629, G.633, A.636, S.639 Ligands: PC1.1 7 PLIP interactions: 2 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:L.629, A:Y.479, A:Y.479, A:L.489, A:F.505 Hydrogen bonds: B:S.639 Salt bridges: A:H.514 PC1.3: 10 residues within 4Å: Chain A: S.840, Y.841, S.873, Y.874, C.877, V.878, R.882, S.883, L.884 Ligands: PC1.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.841, A:L.884 Hydrogen bonds: A:Y.874, A:C.877 PC1.4: 10 residues within 4Å: Chain A: I.571, A.572, Q.579, N.595, Y.596, L.599, A.602, A.649, M.652, L.688 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.571, A:A.602, A:A.649, A:M.652, A:L.688 PC1.5: 10 residues within 4Å: Chain B: F.505, Y.513, W.517, W.844, S.867, A.870, I.871, Y.874 Ligands: PC1.6, PC1.7 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.505, B:Y.513, B:Y.513, B:W.844, B:A.870, B:I.871 pi-Cation interactions: B:W.517 PC1.6: 9 residues within 4Å: Chain A: G.518, L.629, A.636 Chain B: Y.479, L.483, I.510, Y.513, H.514 Ligands: PC1.5 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.479, B:L.483, B:I.510, B:Y.513, A:L.629 Hydrogen bonds: B:Y.479, B:Y.513 Salt bridges: B:H.514, B:H.514 PC1.7: 6 residues within 4Å: Chain B: I.748, Y.841, Y.874, S.883, L.884 Ligands: PC1.5 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.748, B:Y.841, B:Y.874, B:L.884 PC1.8: 9 residues within 4Å: Chain B: I.571, Q.579, D.583, N.595, Y.598, A.602, M.652, V.655, A.656 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.571, B:Y.598, B:A.602, B:M.652, B:V.655, B:A.656 Hydrogen bonds: B:N.595

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kampjut, D. et al., Structure and mechanism of mitochondrial proton-translocating transhydrogenase. Nature (2019)

Release Date

2019-08-28

Peptides

Nicotinamide nucleotide transhydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Nicotinamide nucleotide transhydrogenase

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