SMTL ID : 6s5a.1

CRYSTAL STRUCTURE OF FC P329G LALA WITH ANTI FC P329G FAB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

hetero-2-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-FUC.1: 12 residues within 4Å: Chain A: F.19, F.21, K.24, T.38, V.40, V.42, D.43, Q.73, N.75, T.77, R.79 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-FUC.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.79, A:K.24, A:K.24 Water bridges: A:T.38

1 x NAG- NAG- BMA- MAN- NAG- MAN- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-FUC.2: 12 residues within 4Å: Chain B: F.19, F.21, K.24, T.38, V.42, D.43, Q.73, Y.74, N.75, T.77, R.79 Ligands: NAG-NAG-BMA-MAN-NAG-FUC.1 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:N.75 Water bridges: B:Y.74, B:R.79, B:R.79, B:R.79 Hydrogen bonds: B:K.24

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 8 residues within 4Å: Chain A: Q.140, N.168, K.187, T.189 Chain B: K.148, D.177, S.178, D.179 12 PLIP interactions: 5 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:N.168, A:T.189, B:D.177, B:D.177, B:S.178, B:D.179 Water bridges: A:K.187, A:K.187, B:K.148, B:S.181 Salt bridges: A:K.187, B:K.148 PO4.6: 5 residues within 4Å: Chain D: E.85, T.107, Y.143, K.169, Y.175 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Q.111, D:Y.143, D:Y.175 Salt bridges: D:K.169 PO4.7: 6 residues within 4Å: Chain C: P.129, A.131, K.220 Chain D: S.124, S.125, E.126 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain D Water bridges: C:A.131, C:A.131 Salt bridges: C:K.220 Hydrogen bonds: D:S.125, D:S.125, D:E.126

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain B: V.57, L.87, D.90, K.95 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.95 Water bridges: B:K.95 GOL.5: 5 residues within 4Å: Chain C: I.58, N.59, Y.60, P.62 Chain D: N.96 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:I.58, C:Y.60, C:Y.60 Water bridges: C:N.59, D:N.96 GOL.8: 8 residues within 4Å: Chain C: A.143, T.189 Chain D: S.117, V.118, T.119, L.138, I.139, S.140 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:T.189, D:S.117, D:T.119, D:T.119 Water bridges: C:T.189, D:V.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Darowski, D. et al., P329G-CAR-J: a novel Jurkat-NFAT-based CAR-T reporter system recognizing the P329G Fc mutation. Protein Eng.Des.Sel. (2019)

Release Date

2019-09-25

Peptides

Fc P329G LALA: AB
anti P329G LALA Fab heavy chain: C
anti P329G LALA Fab light chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
H

D
L

Fc P329G LALA

anti P329G LALA Fab heavy chain

anti P329G LALA Fab light chain