SMTL ID : 6s65.1

Crystal Structure of the Homospermidine Synthase (HSS) variant N135F from Blastochloris viridis in Complex with NAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 33 residues within 4Å: Chain A: I.20, G.21, F.22, G.23, S.24, I.25, G.26, R.27, I.47, D.48, P.49, S.50, A.53, A.68, V.69, T.70, L.94, S.95, V.96, D.97, T.98, T.117, V.118, G.163, A.164, N.165, P.166, W.232, S.233, G.236, E.240, I.353, V.403 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:W.232, A:V.403 Hydrogen bonds: A:F.22, A:S.24, A:S.24, A:S.24, A:I.25, A:V.69, A:V.69, A:V.96, A:G.163, A:A.164, A:N.165, A:P.166, A:S.233, A:S.233 Water bridges: A:G.23, A:G.26, A:S.233, A:V.234 NAD.2: 33 residues within 4Å: Chain B: I.20, G.21, F.22, G.23, S.24, I.25, G.26, R.27, I.47, D.48, P.49, S.50, A.53, A.68, V.69, T.70, L.94, S.95, V.96, D.97, T.98, T.117, V.118, G.163, A.164, N.165, P.166, W.232, S.233, G.236, E.240, I.353, V.403 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:W.232, B:V.403 Hydrogen bonds: B:F.22, B:S.24, B:S.24, B:S.24, B:I.25, B:V.69, B:V.69, B:V.96, B:G.163, B:A.164, B:N.165, B:P.166, B:S.233, B:S.233 Water bridges: B:F.22, B:G.23, B:G.23, B:R.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scheidig, A.J. et al., Crystal Structure of the Homospermidine Synthase (HSS) variant N135F from Blastochloris viridis in Complex with NAD. To Be Published

Release Date

2020-07-15

Peptides

Homospermidine synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Homospermidine synthase