- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.50 Å
- Oligo State
- hetero-6-4-mer
- Ligands
- 6 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 6 x F3S: FE3-S4 CLUSTER(Non-covalent)
F3S.2: 12 residues within 4Å:- Chain A: M.515, C.1138, I.1139, M.1140, V.1141, R.1142, Q.1143, C.1144, C.1149, V.1151, V.1153, C.1154
3 PLIP interactions:3 interactions with chain A,- Metal complexes: A:C.1138, A:C.1144, A:C.1149
F3S.4: 11 residues within 4Å:- Chain B: M.515, C.1138, I.1139, M.1140, V.1141, R.1142, Q.1143, C.1144, C.1149, V.1153, C.1154
3 PLIP interactions:3 interactions with chain B,- Metal complexes: B:C.1138, B:C.1144, B:C.1149
F3S.6: 10 residues within 4Å:- Chain C: M.515, C.1138, I.1139, M.1140, V.1141, R.1142, Q.1143, C.1144, C.1149, C.1154
3 PLIP interactions:3 interactions with chain C,- Metal complexes: C:C.1138, C:C.1144, C:C.1149
F3S.8: 12 residues within 4Å:- Chain D: M.515, C.1138, I.1139, M.1140, V.1141, R.1142, Q.1143, C.1144, C.1149, V.1151, V.1153, C.1154
3 PLIP interactions:3 interactions with chain D,- Metal complexes: D:C.1138, D:C.1144, D:C.1149
F3S.10: 10 residues within 4Å:- Chain E: M.515, C.1138, I.1139, M.1140, V.1141, R.1142, Q.1143, C.1144, C.1149, C.1154
3 PLIP interactions:3 interactions with chain E,- Metal complexes: E:C.1138, E:C.1144, E:C.1149
F3S.12: 11 residues within 4Å:- Chain F: M.515, C.1138, I.1139, M.1140, V.1141, R.1142, Q.1143, C.1144, C.1149, V.1153, C.1154
3 PLIP interactions:3 interactions with chain F,- Metal complexes: F:C.1138, F:C.1144, F:C.1149
- 8 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.13: 10 residues within 4Å:- Chain G: C.48, S.49, Q.50, C.51, C.56, C.109, V.110, I.111, V.119, I.121
4 PLIP interactions:4 interactions with chain G,- Metal complexes: G:C.48, G:C.51, G:C.56, G:C.109
SF4.14: 10 residues within 4Å:- Chain G: C.60, N.64, I.66, C.95, C.99, Q.101, L.104, C.105, E.125, V.452
7 PLIP interactions:7 interactions with chain G,- Salt bridges: G:E.125, G:E.125, G:E.125
- Metal complexes: G:C.60, G:C.99, G:C.105, G:E.125
SF4.16: 9 residues within 4Å:- Chain H: C.48, S.49, C.51, C.56, P.67, C.109, V.110, V.119, I.121
4 PLIP interactions:4 interactions with chain H,- Metal complexes: H:C.48, H:C.51, H:C.56, H:C.109
SF4.17: 11 residues within 4Å:- Chain H: C.60, N.64, I.66, C.95, C.99, Q.101, L.104, C.105, I.121, G.122, E.125
7 PLIP interactions:7 interactions with chain H,- Salt bridges: H:E.125, H:E.125, H:E.125
- Metal complexes: H:C.60, H:C.99, H:C.105, H:E.125
SF4.19: 10 residues within 4Å:- Chain I: C.48, S.49, Q.50, C.51, C.56, C.109, V.110, I.111, V.119, I.121
4 PLIP interactions:4 interactions with chain I,- Metal complexes: I:C.48, I:C.51, I:C.56, I:C.109
SF4.20: 10 residues within 4Å:- Chain I: C.60, N.64, I.66, C.95, C.99, Q.101, L.104, C.105, E.125, V.452
7 PLIP interactions:7 interactions with chain I,- Salt bridges: I:E.125, I:E.125, I:E.125
- Metal complexes: I:C.60, I:C.99, I:C.105, I:E.125
SF4.22: 9 residues within 4Å:- Chain J: C.48, S.49, C.51, C.56, P.67, C.109, V.110, V.119, I.121
4 PLIP interactions:4 interactions with chain J,- Metal complexes: J:C.48, J:C.51, J:C.56, J:C.109
SF4.23: 11 residues within 4Å:- Chain J: C.60, N.64, I.66, C.95, C.99, Q.101, L.104, C.105, I.121, G.122, E.125
7 PLIP interactions:7 interactions with chain J,- Salt bridges: J:E.125, J:E.125, J:E.125
- Metal complexes: J:C.60, J:C.99, J:C.105, J:E.125
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.15: 28 residues within 4Å:- Chain G: I.98, G.155, A.156, G.157, P.158, A.159, Y.177, D.178, R.179, Y.180, G.185, L.186, G.190, I.191, F.219, E.220, V.221, T.241, G.242, Y.244, D.300, D.304, F.402, D.443, S.449, L.450, V.451, A.454
16 PLIP interactions:16 interactions with chain G- Hydrophobic interactions: G:I.98, G:I.191, G:L.450, G:V.451
- Hydrogen bonds: G:A.156, G:G.157, G:A.159, G:R.179, G:Y.180, G:G.185, G:L.186, G:E.220, G:V.221, G:T.241, G:D.304, G:D.443
FAD.18: 29 residues within 4Å:- Chain H: I.98, I.154, G.155, A.156, G.157, P.158, A.159, Y.177, D.178, R.179, Y.180, G.185, L.186, G.190, K.195, E.220, V.221, A.240, T.241, G.242, Y.244, L.266, D.300, D.304, F.402, D.443, S.449, V.451, A.454
11 PLIP interactions:11 interactions with chain H- Hydrophobic interactions: H:I.98
- Hydrogen bonds: H:A.156, H:A.159, H:R.179, H:R.179, H:Y.180, H:L.186, H:V.221, H:Y.244, H:S.449
- pi-Cation interactions: H:R.179
FAD.21: 27 residues within 4Å:- Chain I: I.98, G.155, A.156, G.157, P.158, A.159, Y.177, D.178, R.179, Y.180, G.185, L.186, G.190, I.191, E.220, V.221, A.240, T.241, G.242, Y.244, D.300, D.304, F.402, D.443, S.449, L.450, V.451
18 PLIP interactions:18 interactions with chain I- Hydrophobic interactions: I:I.98, I:I.191, I:L.450, I:V.451
- Hydrogen bonds: I:A.156, I:A.159, I:R.179, I:G.185, I:L.186, I:E.220, I:V.221, I:T.241, I:Y.244, I:Y.244, I:D.304, I:D.443, I:D.443, I:S.449
FAD.24: 30 residues within 4Å:- Chain J: I.98, I.154, G.155, A.156, G.157, P.158, A.159, Y.177, D.178, R.179, Y.180, G.185, L.186, G.190, K.195, E.220, V.221, T.241, G.242, Y.244, L.266, D.300, T.301, D.304, F.402, D.443, S.449, L.450, V.451, A.454
15 PLIP interactions:15 interactions with chain J- Hydrophobic interactions: J:I.98, J:L.450
- Hydrogen bonds: J:A.156, J:G.157, J:A.159, J:D.178, J:R.179, J:R.179, J:L.186, J:E.220, J:V.221, J:Y.244, J:D.443, J:D.443
- pi-Cation interactions: J:R.179
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Swuec, P. et al., Cryo-EM Structures of Azospirillum brasilense Glutamate Synthase in Its Oligomeric Assemblies. J.Mol.Biol. (2019)
- Release Date
- 2019-09-11
- Peptides
- Glutamate synthase [NADPH] large chain: ABCDEF
Glutamate synthase [NADPH] small chain: GHIJ - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
J
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.50 Å
- Oligo State
- hetero-6-4-mer
- Ligands
- 6 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 6 x F3S: FE3-S4 CLUSTER(Non-covalent)
- 8 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Swuec, P. et al., Cryo-EM Structures of Azospirillum brasilense Glutamate Synthase in Its Oligomeric Assemblies. J.Mol.Biol. (2019)
- Release Date
- 2019-09-11
- Peptides
- Glutamate synthase [NADPH] large chain: ABCDEF
Glutamate synthase [NADPH] small chain: GHIJ - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
J