SMTL ID : 6s7x.1

dARC1 capsid domain dimer, orthorhombic form at 1.7 Angstrom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: E.66, A.67, T.68, E.72 Chain B: H.151 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:H.151 Hydrogen bonds: A:E.72 NA.4: 3 residues within 4Å: Chain B: H.144, I.145, S.146 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.144, B:S.146

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: H.12, E.25, F.26, N.29 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: A.117, Q.118 Ligand excluded by PLIP CL.5: 8 residues within 4Å: Chain B: G.5, N.6, F.7, S.8, A.9, C.10, Y.33, I.39 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cottee, M.A. et al., Structure ofDrosophila melanogasterARC1 reveals a repurposed molecule with characteristics of retroviral Gag. Sci Adv (2020)

Release Date

2020-01-15

Peptides

Activity-regulated cytoskeleton associated protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Activity-regulated cytoskeleton associated protein 1

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