- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.34 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 5 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 7 residues within 4Å:- Chain A: K.26, H.30, D.32, D.281, R.286
- Ligands: PO4.1, MDN.3
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.32, H2O.1, H2O.1
MG.4: 7 residues within 4Å:- Chain A: K.26
- Chain B: S.161, E.303, K.308, H.313
- Ligands: PO4.1, MDN.3
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.303, B:E.303, H2O.3
MG.5: 5 residues within 4Å:- Chain A: D.281, R.286
- Chain B: D.63, Q.64
- Ligands: MDN.3
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.63, B:D.63, H2O.3, H2O.3, H2O.4
MG.8: 8 residues within 4Å:- Chain A: Q.64
- Chain B: K.26, H.30, D.32, D.281, R.286
- Ligands: ACP.6, PO4.7
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.32, H2O.3, H2O.3, H2O.3
MG.9: 6 residues within 4Å:- Chain A: E.303
- Chain B: E.24, K.26, K.200
- Ligands: ACP.6, PO4.7
No protein-ligand interaction detected (PLIP)- 1 x MDN: METHYLENEDIPHOSPHONIC ACID(Non-covalent)
MDN.3: 15 residues within 4Å:- Chain A: K.26, H.30, D.32, K.200, R.286
- Chain B: D.63, D.159, S.161, E.303, K.308, H.313
- Ligands: PO4.1, MG.2, MG.4, MG.5
11 PLIP interactions:5 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:K.26, A:H.30, A:K.200, A:R.286, B:S.161, B:K.308, B:H.313
- Water bridges: A:D.281, B:Q.64, B:D.159, B:D.159
- 1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
ACP.6: 17 residues within 4Å:- Chain A: E.303, H.313
- Chain B: K.26, H.30, P.31, D.32, D.198, K.200, A.215, N.257, A.259, Y.268, S.275, D.280
- Ligands: PO4.7, MG.8, MG.9
11 PLIP interactions:8 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:K.26, B:H.30, B:D.198, B:K.200, B:Y.268, A:E.303, A:E.303, A:H.313
- Salt bridges: B:K.200
- pi-Stacking: B:Y.268, B:Y.268
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Minici, C. et al., Structures of catalytic cycle intermediates of the Pyrococcus furiosus methionine adenosyltransferase demonstrate negative cooperativity in the archaeal orthologues. J.Struct.Biol. (2020)
- Release Date
- 2020-02-05
- Peptides
- S-adenosylmethionine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.34 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 1 x MDN: METHYLENEDIPHOSPHONIC ACID(Non-covalent)
- 1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Minici, C. et al., Structures of catalytic cycle intermediates of the Pyrococcus furiosus methionine adenosyltransferase demonstrate negative cooperativity in the archaeal orthologues. J.Struct.Biol. (2020)
- Release Date
- 2020-02-05
- Peptides
- S-adenosylmethionine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
H