SMTL ID : 6s8u.1

Structure of the PfEMP1 IT4var13 DBLbeta domain bound to ICAM-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.67 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain B: T.85, E.87, F.173, E.174, N.175 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain B: A.117, N.118, Q.168 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain B: N.156, Q.181 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lennartz, F. et al., Structural insights into diverse modes of ICAM-1 binding byPlasmodium falciparum-infected erythrocytes. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-09-25

Peptides

Erythrocyte membrane protein 1: A
Intercellular adhesion molecule 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Erythrocyte membrane protein 1

Intercellular adhesion molecule 1

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