SMTL ID : 6s98.1

Crystal structure of the catalytic domain of UBE2S WT.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

3 x NA: SODIUM ION(Non-functional Binders)

NA.1: 8 residues within 4Å: Chain A: H.122, P.123, N.124, P.125 Chain B: H.122, P.123, N.124, P.125 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.123 NA.2: 5 residues within 4Å: Chain A: V.98, R.101, T.115 Chain B: I.121, H.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.101 Water bridges: A:D.102 NA.3: 3 residues within 4Å: Chain A: T.53, I.121 Chain B: R.101 2 PLIP interactions: 2 interactions with chain A Water bridges: A:I.121, A:H.122

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: F.34, Q.44, T.46, R.61 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.61 EDO.6: 8 residues within 4Å: Chain B: L.15, V.16, E.19, F.70, P.71, L.107, G.108, I.109 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.19, B:L.107, B:I.109

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 6 residues within 4Å: Chain A: E.51 Chain B: E.106, L.107, G.108, R.110, H.111 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.107, B:H.111 Water bridges: B:H.111, A:E.51 ACT.7: 7 residues within 4Å: Chain A: P.28, D.29, L.114, K.117 Chain B: D.29, L.114, K.117 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:P.28, A:L.114 Salt bridges: A:K.117, B:K.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liess, A.K.L. et al., Dimerization regulates the human APC/C-associated ubiquitin-conjugating enzyme UBE2S. Sci.Signal. (2020)

Release Date

2020-10-21

Peptides

Ubiquitin-conjugating enzyme E2 S: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin-conjugating enzyme E2 S

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