SMTL ID : 6s9a.1

Artificial GTPase-BSE dimer of human Dynamin1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.139, D.182 Chain B: H.180 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.139, A:D.182, A:D.182, B:H.180, H2O.5 ZN.2: 1 residues within 4Å: Chain A: H.341 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.341, H2O.1, H2O.3 ZN.4: 4 residues within 4Å: Chain A: D.177, H.180 Chain B: H.139, D.182 5 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.180, B:H.139, B:D.182, B:D.182, H2O.2 ZN.5: 1 residues within 4Å: Chain B: E.307 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.307, B:E.307, H2O.3

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: P.173, S.181, D.182 Chain B: H.180 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: H.180 Chain B: G.36, P.173, S.181, D.182 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ganichkin, O.M. et al., Quantification and demonstration of the collective constriction-by-ratchet mechanism in the dynamin molecular motor. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2020-08-26

Peptides

Dynamin-1,Dynamin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dynamin-1,Dynamin-1