SMTL ID : 6s9t.1

Dimerization domain of Xenopus laevis LDB1 in complex with darpin 3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-2-2-mer

Ligands

4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 10 residues within 4Å: Chain A: N.23, Y.88, V.90, L.91 Chain C: F.20, N.23, K.24, Y.88, V.90 Ligands: PG4.3 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Water bridges: A:N.23, A:L.91, C:L.91 PG4.2: 6 residues within 4Å: Chain A: T.53, R.129, Y.131, T.144, H.146, S.148 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.53, A:H.146, A:H.146, A:S.148 PG4.3: 10 residues within 4Å: Chain A: F.20, N.23, K.24, Y.88, V.90 Chain C: N.23, Y.88, V.90, L.91 Ligands: PG4.1 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Water bridges: A:L.91, C:N.23, C:L.91 PG4.4: 6 residues within 4Å: Chain C: T.53, R.129, Y.131, T.144, H.146, S.148 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.53, C:T.53, C:H.146, C:S.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Renko, M. et al., Rotational symmetry of the structured Chip/LDB-SSDP core module of the Wnt enhanceosome. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-10-09

Peptides

LIM domain-binding protein 1: AC
Darpin 3: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
D

D
D

LIM domain-binding protein 1

Darpin 3