SMTL ID : 6sa4.1

SALSA / DMBT1 / GP340 SRCR domain 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.52, S.54, D.59, V.93 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.52, A:S.54, A:D.59, A:V.93, H2O.1, H2O.3

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 8 residues within 4Å: Chain A: P.76, G.77, N.78, A.79, W.80, D.120, A.121, G.122 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: D.52, D.53, S.54, W.55, G.77, N.78, E.119, D.120, A.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.53, A:W.55, A:N.78, A:E.119 GOL.4: 5 residues within 4Å: Chain A: D.53, D.91, C.115, E.119 Ligands: GOL.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.53, A:E.119 Water bridges: A:D.53, A:D.53 GOL.5: 5 residues within 4Å: Chain A: D.53, S.54, D.92, R.94 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.54, A:S.54 Water bridges: A:D.53, A:D.53 GOL.6: 4 residues within 4Å: Chain A: G.23, L.24, Y.43, R.44 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.23, A:R.44, A:R.44 Water bridges: A:G.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reichhardt, M.P. et al., Structures of SALSA/DMBT1 SRCR domains reveal the conserved ligand-binding mechanism of the ancient SRCR fold. Life Sci Alliance (2020)

Release Date

2020-03-18

Peptides

Deleted in malignant brain tumors 1 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Deleted in malignant brain tumors 1 protein