SMTL ID : 6sb5.1

CryoEM structure of murine perforin-2 ectodomain in a pore form

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-16-mer

Ligands

32 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.2: 1 residues within 4Å: Chain A: N.169 Ligand excluded by PLIP NAG.3: 4 residues within 4Å: Chain B: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.4: 1 residues within 4Å: Chain B: N.169 Ligand excluded by PLIP NAG.5: 4 residues within 4Å: Chain C: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.6: 1 residues within 4Å: Chain C: N.169 Ligand excluded by PLIP NAG.7: 4 residues within 4Å: Chain D: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.8: 1 residues within 4Å: Chain D: N.169 Ligand excluded by PLIP NAG.9: 4 residues within 4Å: Chain E: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain E: N.169 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain F: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.12: 1 residues within 4Å: Chain F: N.169 Ligand excluded by PLIP NAG.13: 4 residues within 4Å: Chain G: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.14: 1 residues within 4Å: Chain G: N.169 Ligand excluded by PLIP NAG.15: 4 residues within 4Å: Chain H: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.16: 1 residues within 4Å: Chain H: N.169 Ligand excluded by PLIP NAG.17: 4 residues within 4Å: Chain I: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.18: 1 residues within 4Å: Chain I: N.169 Ligand excluded by PLIP NAG.19: 4 residues within 4Å: Chain J: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.20: 1 residues within 4Å: Chain J: N.169 Ligand excluded by PLIP NAG.21: 4 residues within 4Å: Chain K: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.22: 1 residues within 4Å: Chain K: N.169 Ligand excluded by PLIP NAG.23: 4 residues within 4Å: Chain L: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.24: 1 residues within 4Å: Chain L: N.169 Ligand excluded by PLIP NAG.25: 4 residues within 4Å: Chain M: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.26: 1 residues within 4Å: Chain M: N.169 Ligand excluded by PLIP NAG.27: 4 residues within 4Å: Chain N: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.28: 1 residues within 4Å: Chain N: N.169 Ligand excluded by PLIP NAG.29: 4 residues within 4Å: Chain O: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.30: 1 residues within 4Å: Chain O: N.169 Ligand excluded by PLIP NAG.31: 4 residues within 4Å: Chain P: V.205, S.207, L.251, N.253 Ligand excluded by PLIP NAG.32: 1 residues within 4Å: Chain P: N.169 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, T. et al., Structure and mechanism of bactericidal mammalian perforin-2, an ancient agent of innate immunity. Sci Adv (2020)

Release Date

2020-02-05

Peptides

Macrophage-expressed gene 1 protein: ABCDEFGHIJKLMNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Macrophage-expressed gene 1 protein

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