SMTL ID : 6sbc.1

Structure of type II terpene cyclase MstE from Scytonema in complex with farnesyl dihydroxybenzoate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x L4H: farnesyl dihydroxybenzoate(Non-covalent)

L4H.1: 20 residues within 4Å: Chain A: F.50, A.53, A.54, W.60, Y.101, L.105, D.108, T.111, T.149, F.150, Y.158, I.159, V.161, L.164, W.172, W.211, L.311, I.313, F.339, E.340 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.50, A:F.50, A:A.54, A:W.60, A:Y.101, A:Y.101, A:L.105, A:T.149, A:F.150, A:I.159, A:V.161, A:W.211, A:W.211, A:L.311, A:L.311, A:I.313 Hydrogen bonds: A:A.54, A:Y.158 pi-Stacking: A:F.339

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: N.320, P.321, N.322 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: H.260, P.261, N.262 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: S.127, E.128 Ligands: NA.6 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 4 residues within 4Å: Chain A: S.127, E.128, R.129 Ligands: CL.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.128, A:R.129 NA.7: 2 residues within 4Å: Chain A: R.156, I.159 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moosmann, P. et al., A monodomain class II terpene cyclase assembles complex isoprenoid scaffolds. Nat.Chem. (2020)

Release Date

2020-07-15

Peptides

MstE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MstE

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