SMTL ID : 6sbd.1

Structure of type II terpene cyclase MstE_D109A from Scytonema in complex with merosterolic acid A (product)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: Q.23, N.26, A.30, Q.299, R.300, P.301, G.303 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.23, A:P.301, A:G.303 Water bridges: A:Q.23, A:Q.23, A:N.26, A:S.27, A:Q.299 GOL.2: 6 residues within 4Å: Chain A: F.48, N.49, P.51, I.344, F.345, H.347 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.49, A:F.345, A:H.347 Water bridges: A:Y.330, A:I.343 GOL.3: 3 residues within 4Å: Chain A: A.75, H.76, E.79 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.79 Water bridges: A:H.76 GOL.4: 5 residues within 4Å: Chain A: N.29, V.32, A.33, L.36, H.76 No protein-ligand interaction detected (PLIP)

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 9 residues within 4Å: Chain A: W.60, Y.101, D.108, A.110, T.111, T.149, W.211, L.311 Ligands: L4B.6 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.60, A:W.60, A:Y.101, A:A.110, A:T.149, A:W.211, A:W.211, A:L.311 Hydrogen bonds: A:T.111, A:T.111 Water bridges: A:W.212, A:Y.217

1 x L4B: (4~{a}~{R},4~{b}~{S},6~{a}~{R},11~{a}~{R},11~{b}~{S},13~{a}~{R})-1,1,4~{a},6~{a},11~{b}-pentamethyl-9,10-bis(oxidanyl)- 3,4,4~{b},5,6,11,11~{a},12,13,13~{a}-decahydro-2~{H}-indeno[2,1-a]phenanthrene-7-carboxylic acid(Non-covalent)

L4B.6: 17 residues within 4Å: Chain A: F.50, Q.52, A.53, A.54, Y.101, L.105, F.150, Y.158, I.159, W.172, W.211, L.311, I.313, R.338, F.339, E.340 Ligands: MPD.5 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:F.50, A:A.54, A:Y.101, A:L.105, A:F.150, A:F.150, A:Y.158, A:I.159, A:W.211, A:W.211, A:L.311, A:I.313 Hydrogen bonds: A:F.50, A:Q.52, A:Q.52, A:Q.52, A:A.53, A:A.54, A:F.339, A:E.340, A:E.340

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moosmann, P. et al., A monodomain class II terpene cyclase assembles complex isoprenoid scaffolds. Nat.Chem. (2020)

Release Date

2020-07-15

Peptides

MstE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MstE