SMTL ID : 6sbe.1

Structure of type II terpene cyclase MstE_D109N from Scytonema in complex with geranylgeranyl dihydroxybenzoate (substrate)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Q.204, N.206, H.215, W.244, K.247, R.248 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.204, A:N.206, A:K.247 GOL.2: 5 residues within 4Å: Chain A: Q.23, A.30, Q.299, R.300, P.301 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.23, A:P.301 Water bridges: A:Q.23 GOL.3: 6 residues within 4Å: Chain A: Y.315, F.324, H.326, R.328, E.340, G.341 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.315, A:Y.315, A:H.326, A:R.328, A:R.328 GOL.4: 7 residues within 4Å: Chain A: T.67, M.68, A.70, T.71, R.273, N.358, K.362 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.70, A:T.71, A:R.273, A:R.273, A:N.358 Water bridges: A:Q.117 GOL.5: 2 residues within 4Å: Chain A: S.25, N.26 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.26, A:N.26 Water bridges: A:S.25 GOL.6: 2 residues within 4Å: Chain A: W.327, R.328 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 4 residues within 4Å: Chain A: E.239, A.243, L.246, N.278 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.239, A:E.239, A:N.278

1 x L4E: geranylgeranyl dihydroxybenzoate(Non-covalent)

L4E.8: 22 residues within 4Å: Chain A: F.50, A.53, A.54, W.60, Y.101, L.105, D.108, N.110, T.111, T.149, F.150, Y.158, I.159, V.161, L.164, W.172, W.211, W.212, L.311, I.313, F.339, E.340 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.50, A:F.50, A:A.54, A:W.60, A:Y.101, A:L.105, A:N.110, A:T.149, A:F.150, A:F.150, A:V.161, A:W.211, A:W.211, A:W.211, A:L.311, A:I.313 Hydrogen bonds: A:A.54, A:Y.158 pi-Stacking: A:F.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moosmann, P. et al., A monodomain class II terpene cyclase assembles complex isoprenoid scaffolds. Nat.Chem. (2020)

Release Date

2020-07-15

Peptides

MstE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MstE