SMTL ID : 6sbi.1 (1 other biounit)

X-ray structure of murine Fumarylacetoacetate hydrolase domain containing protein 1 (FAHD1) in complex with inhibitor oxalate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: E.112, E.114, D.143, K.164 Ligands: OXL.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.112, A:E.114, A:D.143, H2O.1 MG.7: 5 residues within 4Å: Chain B: E.112, E.114, D.143, K.164 Ligands: OXL.10 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.112, B:E.114, B:D.143, H2O.1

1 x K: POTASSIUM ION(Non-covalent)

K.2: 4 residues within 4Å: Chain A: K.59, N.60 Chain B: K.59, N.60 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:K.59, H2O.1

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: P.159, W.160 Chain B: P.159, W.160 Ligand excluded by PLIP CL.4: 7 residues within 4Å: Chain A: C.106, R.107, N.108, A.146, R.147, D.148, V.149 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: G.195, E.245, R.257 Ligand excluded by PLIP CL.8: 7 residues within 4Å: Chain B: C.106, R.107, N.108, A.146, R.147, D.148, V.149 Ligand excluded by PLIP CL.9: 6 residues within 4Å: Chain B: H.185, A.186, L.187, K.202, T.203, S.204 Ligand excluded by PLIP

2 x OXL: OXALATE ION(Non-covalent)

OXL.6: 12 residues within 4Å: Chain A: V.64, G.65, R.66, H.71, F.86, E.112, E.114, D.143, K.164, G.232, T.233 Ligands: MG.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.66, A:T.233 Water bridges: A:R.66, A:D.143, A:D.143 Salt bridges: A:H.71, A:K.164 OXL.10: 12 residues within 4Å: Chain B: V.64, G.65, R.66, H.71, F.86, E.112, E.114, D.143, K.164, G.232, T.233 Ligands: MG.7 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.66, B:E.112, B:E.114, B:T.233 Salt bridges: B:H.71, B:H.71, B:K.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weiss, A.K.H. et al., Structural and functional comparison of fumarylacetoacetate domain containing protein 1 in human and mouse. Biosci.Rep. (2020)

Release Date

2020-03-25

Peptides

Acylpyruvase FAHD1, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acylpyruvase FAHD1, mitochondrial

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