SMTL ID : 6scj.1

The structure of human thyroglobulin

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 11 residues within 4Å: Chain A: N.2013, Q.2016, G.2019, G.2020, E.2054, T.2057, F.2060 Chain B: N.212, R.213, F.214, P.215 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.213, B:R.213 NAG-NAG-BMA.2: 11 residues within 4Å: Chain A: N.212, R.213, F.214, P.215 Chain B: N.2013, Q.2016, G.2019, G.2020, E.2054, T.2057, F.2060 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.213, A:R.213

30 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.947, R.1007, R.1008 Ligand excluded by PLIP NAG.4: 1 residues within 4Å: Chain A: N.1220 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain A: N.1349 Chain B: V.133, Q.135 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain A: H.1295, Q.1353, N.1365 Ligand excluded by PLIP NAG.7: 5 residues within 4Å: Chain A: R.1549, E.1572, G.1714, A.1715, N.1716 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain A: P.2248, N.2250 Ligand excluded by PLIP NAG.9: 3 residues within 4Å: Chain A: E.2138, P.2294, N.2295 Ligand excluded by PLIP NAG.10: 3 residues within 4Å: Chain A: R.2578, A.2579, N.2582 Ligand excluded by PLIP NAG.11: 1 residues within 4Å: Chain A: N.2122 Ligand excluded by PLIP NAG.12: 1 residues within 4Å: Chain A: N.1869 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain A: A.1773, N.1774 Ligand excluded by PLIP NAG.14: 5 residues within 4Å: Chain A: N.198, T.200, D.201, F.205, E.230 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Chain A: N.76 Ligand excluded by PLIP NAG.16: 3 residues within 4Å: Chain A: E.256, N.479, N.484 Ligand excluded by PLIP NAG.17: 2 residues within 4Å: Chain A: I.109, N.110 Ligand excluded by PLIP NAG.18: 3 residues within 4Å: Chain B: N.947, R.1007, R.1008 Ligand excluded by PLIP NAG.19: 1 residues within 4Å: Chain B: N.1220 Ligand excluded by PLIP NAG.20: 3 residues within 4Å: Chain A: V.133, Q.135 Chain B: N.1349 Ligand excluded by PLIP NAG.21: 3 residues within 4Å: Chain B: H.1295, Q.1353, N.1365 Ligand excluded by PLIP NAG.22: 5 residues within 4Å: Chain B: R.1549, E.1572, G.1714, A.1715, N.1716 Ligand excluded by PLIP NAG.23: 2 residues within 4Å: Chain B: P.2248, N.2250 Ligand excluded by PLIP NAG.24: 3 residues within 4Å: Chain B: E.2138, P.2294, N.2295 Ligand excluded by PLIP NAG.25: 3 residues within 4Å: Chain B: R.2578, A.2579, N.2582 Ligand excluded by PLIP NAG.26: 1 residues within 4Å: Chain B: N.2122 Ligand excluded by PLIP NAG.27: 1 residues within 4Å: Chain B: N.1869 Ligand excluded by PLIP NAG.28: 2 residues within 4Å: Chain B: A.1773, N.1774 Ligand excluded by PLIP NAG.29: 5 residues within 4Å: Chain B: N.198, T.200, D.201, F.205, E.230 Ligand excluded by PLIP NAG.30: 1 residues within 4Å: Chain B: N.76 Ligand excluded by PLIP NAG.31: 3 residues within 4Å: Chain B: E.256, N.479, N.484 Ligand excluded by PLIP NAG.32: 2 residues within 4Å: Chain B: I.109, N.110 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coscia, F. et al., The structure of human thyroglobulin. Nature (2020)

Release Date

2020-02-12

Peptides

Thyroglobulin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thyroglobulin

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