SMTL ID : 6sdf.1 (1 other biounit)

N-terminal SH3 domain of Grb2 protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

5 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 1 residues within 4Å: Chain A: D.16 No protein-ligand interaction detected (PLIP) MPD.2: 4 residues within 4Å: Chain A: I.5, A.6, R.22, G.23 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.6 MPD.3: 6 residues within 4Å: Chain A: N.36, W.37, P.50, N.52, Y.53 Ligands: MPD.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:N.36, A:Y.53 Hydrogen bonds: A:N.52, A:N.52 Water bridges: A:N.52 MPD.4: 4 residues within 4Å: Chain A: Y.8, N.52, Y.53 Ligands: MPD.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.8, A:Y.53 Water bridges: A:N.52 MPD.5: 3 residues within 4Å: Chain A: E.3, I.25, K.57 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.57

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: H.59, P.60 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain A: S.19 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bolgov, A. et al., Crystal structure of the SH3 domain of growth factor receptor-bound protein 2. Acta Crystallogr.,Sect.F (2020)

Release Date

2020-01-29

Peptides

Growth factor receptor-bound protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Growth factor receptor-bound protein 2

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