SMTL ID : 6sdp.1

Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment 4np

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: G.47, K.48, Y.49, F.50, R.51, Q.91, F.246 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.48, A:Y.49, A:F.50, A:Q.91 Water bridges: A:R.51, A:R.51, A:R.51, A:E.88, A:Q.91 Salt bridges: A:R.51 SO4.5: 7 residues within 4Å: Chain B: G.47, K.48, Y.49, F.50, R.51, Q.91, F.246 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.48, B:Y.49, B:F.50, B:Q.91 Water bridges: B:R.51, B:R.51, B:R.51, B:E.88, B:Q.91 Salt bridges: B:R.51

4 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.2: 3 residues within 4Å: Chain A: D.98, D.102, Q.167 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.98, A:D.102, H2O.1, H2O.1, H2O.5 ZN.3: 3 residues within 4Å: Chain A: Q.247, D.250, D.254 No protein-ligand interaction detected (PLIP) ZN.6: 3 residues within 4Å: Chain B: D.98, D.102, Q.167 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.98, B:D.102, H2O.11, H2O.11, H2O.15 ZN.7: 3 residues within 4Å: Chain B: Q.247, D.250, D.254 No protein-ligand interaction detected (PLIP)

2 x NPO: P-NITROPHENOL(Non-covalent)

NPO.4: 11 residues within 4Å: Chain A: F.50, R.51, T.54, T.212, Y.213, P.216, F.246, V.353, K.356, T.357, R.360 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.50, A:T.212, A:Y.213, A:F.246, A:V.353 Hydrogen bonds: A:T.212 NPO.8: 11 residues within 4Å: Chain B: F.50, R.51, T.54, T.212, Y.213, P.216, F.246, V.353, K.356, T.357, R.360 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.50, B:T.212, B:Y.213, B:F.246, B:V.353 Hydrogen bonds: B:T.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Magari, F. et al., Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment 4np. To Be Published

Release Date

2020-08-26

Peptides

Farnesyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl diphosphate synthase

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