SMTL ID : 6sdx.1

Salmonella ATPase InvC with ATP gamma S

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

monomer

Ligands

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 11 residues within 4Å: Chain A: S.82, A.83, G.84, C.85, G.86, K.87, T.88, M.89, E.110, Y.260 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.84, A:C.85, A:G.86, A:K.87, A:T.88, A:T.88, A:M.89, A:E.110 Water bridges: A:T.88 Salt bridges: A:K.87 pi-Stacking: A:Y.260, A:Y.260

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.88, D.171 Ligands: AGS.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.88, A:D.171, H2O.1 MG.3: 5 residues within 4Å: Chain A: Y.196, E.228, A.233, P.235, M.236 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:Y.196

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: L.254, I.263, D.264, V.265, L.266, M.292, E.296, L.329 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.263, A:V.265, A:L.266 GOL.5: 4 residues within 4Å: Chain A: D.42, N.147, Q.150, L.180 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.42, A:D.42, A:N.147, A:Q.150 GOL.6: 6 residues within 4Å: Chain A: R.39, V.43, A.44, P.46, E.157, R.160 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.39, A:R.160, A:R.160, A:R.210 GOL.7: 3 residues within 4Å: Chain A: G.112, R.113, T.116 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bernal, I. et al., Structural analysis of ligand-bound states of the Salmonella type III secretion system ATPase InvC. Protein Sci. (2019)

Release Date

2019-08-21

Peptides

ATP synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATP synthase

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