SMTL ID : 6ser.1

Crystal structure of human STARD10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: K.94, W.225, H.229 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.94 Salt bridges: A:K.94, A:H.229

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: Y.117, W.119, N.147, T.169, V.189 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.147, A:N.147 PEG.3: 7 residues within 4Å: Chain A: H.87, I.89, D.104, D.113, R.134, P.235, W.236 2 PLIP interactions: 2 interactions with chain A Water bridges: A:I.89, A:R.134 PEG.4: 9 residues within 4Å: Chain A: L.65, H.66, I.68, Y.185, A.187, Q.188, V.189, N.201, S.204 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.185, A:V.189, A:N.201 PEG.5: 5 residues within 4Å: Chain A: E.101, Y.116, Y.155, P.156, R.158 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.101, A:P.156

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.6: 8 residues within 4Å: Chain A: L.86, R.92, T.102, R.134, I.145, M.146, N.147, Y.171 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.92, A:T.102, A:N.147 PGE.7: 5 residues within 4Å: Chain A: D.104, I.105, Y.155, P.243, L.244 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.155 PGE.8: 9 residues within 4Å: Chain A: R.92, W.95, D.96, Y.171, Y.185, S.204, A.208, A.211, M.215 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.92, A:D.96, A:Y.171, A:S.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, K. et al., The crystal structure of human STARD10. To Be Published

Release Date

2020-08-26

Peptides

START domain-containing protein 10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

START domain-containing protein 10