SMTL ID : 6sf8.1

Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment j51

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: G.47, K.48, Y.49, F.50, R.51, Q.91, F.246 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.48, A:Y.49, A:F.50, A:Q.91 Water bridges: A:R.51, A:R.51, A:R.51, A:E.88 Salt bridges: A:R.51 SO4.3: 7 residues within 4Å: Chain B: G.47, K.48, Y.49, F.50, R.51, Q.91, F.246 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:K.48, B:Y.49, B:F.50, B:Q.91 Water bridges: B:R.51, B:R.51, B:R.51, B:E.88 Salt bridges: B:R.51

2 x 47Y: 3-[(4E)-4-imino-5,6-dimethylfuro[2,3-d]pyrimidin-3(4H)-yl]-N,N-dimethylpropan-1-amine(Non-covalent)

47Y.2: 8 residues within 4Å: Chain A: V.252, F.256, W.276, L.277, S.313, L.317, Q.318, F.321 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.252, A:F.256, A:Q.318, A:F.321 Water bridges: A:Q.318 pi-Stacking: A:F.256 47Y.4: 8 residues within 4Å: Chain B: V.252, F.256, W.276, L.277, S.313, L.317, Q.318, F.321 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.252, B:F.256, B:Q.318, B:F.321 Water bridges: B:Q.318 pi-Stacking: B:F.256

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Magari, F. et al., Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment j51. To Be Published

Release Date

2020-08-26

Peptides

Farnesyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl diphosphate synthase

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