SMTL ID : 6shu.1

Borrelia burgdorferi BmpD nucleoside binding protein bound to adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x ADN: ADENOSINE(Non-covalent)

ADN.1: 16 residues within 4Å: Chain A: D.55, F.63, N.64, G.111, F.112, E.134, V.183, L.184, F.187, F.212, A.236, A.237, G.238, V.260, D.261, K.278 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:D.55, A:N.64, A:G.238, A:D.261, A:K.278 Water bridges: A:D.60, A:F.112, A:R.113, A:E.134, A:D.261, A:D.261 pi-Stacking: A:F.212, A:F.212

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: G.216, R.219 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: D.214, F.215, G.216 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.215, A:G.216 Water bridges: A:D.214, A:D.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuellar, J. et al., Structural and Biomolecular Analyses of Borrelia burgdorferi BmpD Reveal a Substrate-Binding Protein of an ABC-Type Nucleoside Transporter Family. Infect.Immun. (2020)

Release Date

2020-02-12

Peptides

Basic membrane protein D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Basic membrane protein D