SMTL ID : 6sif.1

Epidermicin antimicrobial protein from Staphylococcus epidermidis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-octamer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain B: K.14, Y.43, K.47 Chain G: K.17 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain G Hydrogen bonds: B:Y.43 Salt bridges: B:K.14, B:K.47, G:K.17 Water bridges: G:K.17 SO4.2: 4 residues within 4Å: Chain D: H.25, K.26, G.27, T.28 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:G.27, D:T.28, D:T.28, D:T.28 Salt bridges: D:H.25 SO4.3: 2 residues within 4Å: Chain E: Q.45, K.48 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:Q.45 Salt bridges: E:K.48 SO4.4: 3 residues within 4Å: Chain F: K.14, Y.43 Chain H: K.17 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain F Salt bridges: H:K.17, F:K.14 SO4.5: 2 residues within 4Å: Chain F: H.25, T.28 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:T.28 Salt bridges: F:H.25 SO4.6: 2 residues within 4Å: Chain F: Q.45, K.48 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:Q.45 Water bridges: F:W.41 Salt bridges: F:K.48 SO4.7: 3 residues within 4Å: Chain B: K.17 Chain G: K.14, Y.43 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain B Salt bridges: G:K.14, B:K.17 SO4.8: 4 residues within 4Å: Chain H: H.25, K.26, G.27, T.28 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:G.27, H:T.28, H:T.28 Salt bridges: H:H.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hammond, K. et al., Flowering Poration-A Synergistic Multi-Mode Antibacterial Mechanism by a Bacteriocin Fold. Iscience (2020)

Release Date

2020-08-26

Peptides

Epidermicin locus structural protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Epidermicin locus structural protein

Related Entries With Identical Sequence