SMTL ID : 6sii.1

T. brucei FPPS in complex with 1-((1H-indol-3-yl)methyl)-N-(3-chlorobenzyl)piperidin-4-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

homo-dimer

Ligands

2 x LEZ: ~{N}-[(3-chlorophenyl)methyl]-1-(1~{H}-indol-3-ylmethyl)piperidin-4-amine(Non-covalent)

LEZ.1: 14 residues within 4Å: Chain A: D.177, Y.207, I.210, K.214, T.215, Q.254, D.257, D.258, M.260, D.261, V.272, G.273, D.275, C.281 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.207, A:I.210, A:M.260 Hydrogen bonds: A:Q.254, A:D.261, A:V.272 Salt bridges: A:D.257, A:D.261, A:D.275 Halogen bonds: A:T.215 LEZ.3: 14 residues within 4Å: Chain B: D.177, Y.207, I.210, K.214, T.215, Q.254, D.257, D.258, M.260, D.261, V.272, G.273, D.275, C.281 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Y.207, B:I.210, B:M.260 Hydrogen bonds: B:Q.254, B:V.272 Salt bridges: B:D.257, B:D.261, B:D.275 Halogen bonds: B:T.215

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: R.162, R.165, V.166, L.221, V.225 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.162 GOL.4: 5 residues within 4Å: Chain B: R.162, R.165, V.166, L.221, V.225 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muenzker, L. et al., T. brucei FPPS. To Be Published

Release Date

2020-08-26

Peptides

Farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl pyrophosphate synthase

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