SMTL ID : 6sit.1

Pseudo-atomic crystal structure of the desmoglein 2 - human adenovirus serotype 3 fibre knob complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.50 Å

Oligo State

hetero-3-3-mer

Ligands

18 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain B: N.5, N.7, D.37, D.39, N.45, D.95 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.7, B:D.37, B:D.39, B:N.45, B:D.95 CA.2: 7 residues within 4Å: Chain B: E.22, R.81, E.82, D.116, V.117, D.119, D.151 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.22, B:E.82, B:D.116 CA.3: 4 residues within 4Å: Chain B: E.22, D.80, E.82, D.119 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.22, B:D.80, B:E.82, B:D.119, B:D.119 CA.4: 6 residues within 4Å: Chain B: N.118, N.120, D.149, D.151, N.157, N.208 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.120, B:D.149, B:D.149, B:D.151, B:N.157 CA.5: 6 residues within 4Å: Chain B: E.135, E.195, N.233, V.234, E.236 Ligands: CA.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.135, B:E.195, B:V.234, B:E.236 CA.6: 6 residues within 4Å: Chain B: E.135, D.193, Y.194, E.195, E.236 Ligands: CA.5 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.135, B:D.193, B:E.195, B:E.236 CA.7: 6 residues within 4Å: Chain D: N.5, N.7, D.37, D.39, N.45, D.95 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:N.7, D:D.37, D:D.39, D:N.45, D:D.95 CA.8: 7 residues within 4Å: Chain D: E.22, R.81, E.82, D.116, V.117, D.119, D.151 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.22, D:E.82, D:D.116 CA.9: 4 residues within 4Å: Chain D: E.22, D.80, E.82, D.119 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.22, D:D.80, D:E.82, D:D.119, D:D.119 CA.10: 6 residues within 4Å: Chain D: N.118, N.120, D.149, D.151, N.157, N.208 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:N.120, D:D.149, D:D.149, D:D.151, D:N.157 CA.11: 6 residues within 4Å: Chain D: E.135, E.195, N.233, V.234, E.236 Ligands: CA.12 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.135, D:E.195, D:V.234, D:E.236 CA.12: 6 residues within 4Å: Chain D: E.135, D.193, Y.194, E.195, E.236 Ligands: CA.11 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.135, D:D.193, D:E.195, D:E.236 CA.13: 6 residues within 4Å: Chain F: N.5, N.7, D.37, D.39, N.45, D.95 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:N.7, F:D.37, F:D.39, F:N.45, F:D.95 CA.14: 7 residues within 4Å: Chain F: E.22, R.81, E.82, D.116, V.117, D.119, D.151 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.22, F:E.82, F:D.116 CA.15: 4 residues within 4Å: Chain F: E.22, D.80, E.82, D.119 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.22, F:D.80, F:E.82, F:D.119, F:D.119 CA.16: 6 residues within 4Å: Chain F: N.118, N.120, D.149, D.151, N.157, N.208 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:N.120, F:D.149, F:D.149, F:D.151, F:N.157 CA.17: 6 residues within 4Å: Chain F: E.135, E.195, N.233, V.234, E.236 Ligands: CA.18 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:E.135, F:E.195, F:V.234, F:E.236 CA.18: 6 residues within 4Å: Chain F: E.135, D.193, Y.194, E.195, E.236 Ligands: CA.17 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:E.135, F:D.193, F:E.195, F:E.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vassal-Stermann, E. et al., Intermediate-resolution crystal structure of the human adenovirus B serotype 3 fibre knob in complex with the EC2-EC3 fragment of desmoglein 2. Acta Crystallogr.,Sect.F (2019)

Release Date

2019-12-18

Peptides

Fiber protein: ACE
Desmoglein-2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
D

D
D

F
D

Fiber protein

Desmoglein-2