- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.49 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.9: 19 residues within 4Å:- Chain B: T.188, E.190, N.191
- Chain C: D.12, G.13, A.14, V.15, G.16, K.17, T.18, C.19, F.29, V.34, Q.117, D.119, L.120, S.159, A.160, L.161
19 PLIP interactions:18 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:A.14, C:V.15, C:G.16, C:K.17, C:T.18, C:C.19, C:Q.117, C:Q.117, C:A.160, C:L.161, B:E.190
- Water bridges: C:K.17, C:K.17, C:T.18, C:P.35
- Salt bridges: C:K.17, C:D.119
- pi-Stacking: C:F.29, C:F.29
GDP.13: 17 residues within 4Å:- Chain A: E.190, N.191
- Chain D: D.12, A.14, V.15, G.16, K.17, T.18, C.19, F.29, V.34, Q.117, D.119, L.120, S.159, A.160, L.161
21 PLIP interactions:21 interactions with chain D- Hydrogen bonds: D:A.14, D:V.15, D:G.16, D:K.17, D:T.18, D:T.18, D:C.19, D:Q.117, D:Q.117, D:S.159, D:A.160, D:L.161
- Water bridges: D:K.17, D:K.17, D:T.18, D:T.18, D:D.58
- Salt bridges: D:K.17, D:D.119
- pi-Stacking: D:F.29, D:F.29
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 5 residues within 4Å:- Chain B: S.53
- Chain C: V.37, T.59, A.60, R.69
4 PLIP interactions:1 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: C:A.60, B:S.53, B:S.53
- Water bridges: B:S.53
GOL.14: 6 residues within 4Å:- Chain A: S.53
- Chain D: V.37, T.59, A.60, L.68, R.69
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:S.53, D:A.60
- Water bridges: A:S.50
- 2 x LJN: [(2~{R},3~{S},4~{R},5~{R})-5-[4-(acetamidomethyl)-1,2,3-triazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate(Covalent)
LJN.11: 9 residues within 4Å:- Chain B: A.192, Y.229, I.233, G.243, R.247, E.270, I.273, C.274
- Chain C: Y.33
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:A.192
- Hydrogen bonds: B:R.247, B:R.247, B:C.274
- Water bridges: B:T.129, B:R.244, B:R.247
LJN.15: 15 residues within 4Å:- Chain A: A.192, F.194, Y.229, I.233, H.236, E.240, G.241, N.242, G.243, R.247, E.270, I.273, C.274
- Chain D: Y.33
- Ligands: SO4.3
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:A.192, A:F.194
- Hydrogen bonds: A:G.241, A:N.242, A:N.242, A:G.243, A:R.247, A:R.247
- Salt bridges: A:H.236
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gulen, B. et al., Identification of targets of AMPylating Fic enzymes by co-substrate-mediated covalent capture. Nat.Chem. (2020)
- Release Date
- 2020-03-18
- Peptides
- Protein adenylyltransferase and cysteine protease IbpA: AB
Cell division control protein 42 homolog: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.49 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x LJN: [(2~{R},3~{S},4~{R},5~{R})-5-[4-(acetamidomethyl)-1,2,3-triazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gulen, B. et al., Identification of targets of AMPylating Fic enzymes by co-substrate-mediated covalent capture. Nat.Chem. (2020)
- Release Date
- 2020-03-18
- Peptides
- Protein adenylyltransferase and cysteine protease IbpA: AB
Cell division control protein 42 homolog: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D