SMTL ID : 6sja.1

Structure of HPV16 E6 oncoprotein in complex with IRF3 LxxLL motif

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- GLC- GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose

GLC-GLC-GLC-GLC-GLC.1: 20 residues within 4Å: Chain A: N.13, D.15, K.16, K.43, E.45, E.46, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, Y.342, R.345 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.43, A:R.345

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.105, C.108, C.138, C.141 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.105, B:C.108, B:C.138, B:C.141 ZN.3: 4 residues within 4Å: Chain B: C.32, C.35, C.65, C.68 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.32, B:C.35, B:C.65, B:C.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poirson, J. et al., Deciphering de molecular and structural interaction between IRF3 and HPV16 E6. To be published

Release Date

2019-09-04

Peptides

Maltose/maltodextrin-binding periplasmic protein,Interferon regulatory factor 3: A
Protein E6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Maltose/maltodextrin-binding periplasmic protein,Interferon regulatory factor 3

Protein E6

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