SMTL ID : 6sjd.1

ZC3H12B-ribonuclease domain bound to RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.29 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.14, D.96, D.97 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.97, H2O.1, H2O.1, H2O.1 MG.2: 3 residues within 4Å: Chain B: Y.95, D.97, D.115 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.97, H2O.1, H2O.1 MG.4: 3 residues within 4Å: Chain D: S.14, D.96, D.97 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.97, H2O.2, H2O.2, H2O.2 MG.5: 3 residues within 4Å: Chain E: Y.95, D.97, D.115 3 PLIP interactions: 1 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.97, H2O.2, H2O.2

2 x CAC: CACODYLATE ION(Non-functional Binders)

CAC.3: 5 residues within 4Å: Chain C: U.3, G.4, C.5, A.7 Chain F: C.18 No protein-ligand interaction detected (PLIP) CAC.6: 5 residues within 4Å: Chain C: C.18 Chain F: U.3, G.4, C.5, A.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jolma, A. et al., Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences. Genome Res. (2020)

Release Date

2020-07-22

Peptides

Probable ribonuclease ZC3H12B: ABDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

D
B

E
A

Probable ribonuclease ZC3H12B