SMTL ID : 6sjv.1

Structure of HPV18 E6 oncoprotein in complex with mutant E6AP LxxLL motif

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-dimer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.66, A:R.67, A:R.67, A:E.154, A:Y.156, A:R.345 Water bridges: A:E.45 GLC-GLC.4: 16 residues within 4Å: Chain B: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.66, B:R.67, B:R.67, B:Y.156, B:R.345

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.476, C.479, C.509, C.512 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.476, A:C.479, A:C.509, A:C.512 ZN.3: 4 residues within 4Å: Chain A: C.403, C.406, C.436, C.439 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.403, A:C.406, A:C.436, A:C.439 ZN.5: 4 residues within 4Å: Chain B: C.476, C.479, C.509, C.512 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.476, B:C.479, B:C.509, B:C.512 ZN.6: 4 residues within 4Å: Chain B: C.403, C.406, C.436, C.439 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.403, B:C.406, B:C.436, B:C.439

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suarez, I.P. et al., Cellular target recognition by HPV18 and HPV49 oncoproteins. To be published

Release Date

2019-09-04

Peptides

Maltodextrin-binding protein,Protein E6,Ubiquitin-protein ligase E3A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Maltodextrin-binding protein,Protein E6,Ubiquitin-protein ligase E3A