SMTL ID : 6sk9.1

Nek2 bound to purine compound 51

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x F9N: 3-[[6-(cyclohexylmethoxy)-7~{H}-purin-2-yl]amino]-~{N}-[3-(dimethylamino)propyl]benzenesulfonamide(Non-covalent)

F9N.1: 16 residues within 4Å: Chain A: I.14, G.15, T.16, C.22, V.35, K.37, M.86, E.87, Y.88, C.89, G.92, D.93, A.95, S.96, A.145, F.148 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.88 Hydrogen bonds: A:K.37, A:K.37, A:C.89, A:C.89, A:D.93, A:S.96 Salt bridges: A:D.93

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: R.235, Y.238, D.242 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.235, A:R.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Byrne, M.J. et al., Nek7 conformational flexibility and inhibitor binding probed through protein engineering of the R-spine. Biochem.J. (2020)

Release Date

2020-06-17

Peptides

Serine/threonine-protein kinase Nek2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase Nek2

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